Issues with code 1 failure - tried seweral options with no luck


#1

Can’t seem to figure out why I keep getting the code 1 error. If I only select fast orthophoto it will run fine. Anything else and I generally get code 1 after an hour or two. I’ve adjusted the min-num-features option a few times with no changes. It’s a fairly small dataset (93 photos) taken with a DJI phantom 4. No GCPs. I know that this has been almost beat to death, but I haven’t found a solution that helps me out.

link to photos
https://drive.google.com/drive/folders/1TS7pyyQkKGB6jRmOV4CeApXo0v0rUPK6?usp=sharing

output
… output truncated at 500 lines …
Processing view view_0030.mve…
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Processing view view_0082.mve…
Processing view view_0083.mve…
Skipping
view_0083.mve
: Invalid camera.

Processing view view_0084.mve…
Processing view view_0085.mve…
Processing view view_0086.mve…
Processing view view_0087.mve…
Processing view view_0088.mve…
Processing view view_0089.mve…
Processing view view_0090.mve…
Processing view view_0091.mve…
Processing view view_0092.mve…

Created 93 views with 92 valid cameras.
Imported 92 undistorted images.
[DEBUG] running /code/SuperBuild/src/elibs/smvs/app/smvsrecon -t2 -a1.0 --max-pixels=409600 -o1 --debug-lvl=0 --force /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/smvs
Shading-aware Multi-view Stereo (built on Jan 29 2019, 15:57:26)

Initializing scene with 92 views…
Initialized 92 views (max ID is 92), took 10ms.
Reading Photosynther file (93 cameras, 140112 features)…
Automatic input scale: 2
Input embedding: undist-L2
Output embedding: smvs-B2
Running view selection for 92 views…
done, took 39.211s.
Resizing input images for 92 views…
done, took 18.677s.
Starting 1/92 ID: 0 Neighbors: 4 6 26 18 23 36
Starting 2/92 ID: 1 Neighbors: 10 28 80 54 74 75
Finished 1/92 ID: 0
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Saving views to MVE files… done.
Done. Reconstruction took: 3447.59s
Generating Pointcloud, Cutting surfaces for 92 views …
Done. Took: 148.866s
Writing PLY file (14562362 verts, with colors, with normals, with confidences, with values, 0 faces)…
done.
[INFO] Running ODM SMVS Cell - Finished
[INFO] Running ODM Meshing Cell
[DEBUG] Writing ODM Mesh file in: /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_meshing/odm_mesh.ply
[DEBUG] running /code/SuperBuild/src/PoissonRecon/Bin/Linux/PoissonRecon --in /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/smvs/smvs_dense_point_cloud.ply --out /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_meshing/odm_mesh.dirty.ply --depth 9 --pointWeight 4 --samplesPerNode 1.0 --threads 2 --linearFit
[DEBUG] running /code/build/bin/odm_cleanmesh -inputFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_meshing/odm_mesh.dirty.ply -outputFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_meshing/odm_mesh.ply -removeIslands -decimateMesh 100000
[DEBUG] Writing ODM 2.5D Mesh file in: /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_meshing/odm_25dmesh.ply
[DEBUG] ODM 2.5D DSM resolution: 0.25735
[INFO] Created temporary directory: /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_meshing/tmp
[INFO] Creating DSM for 2.5D mesh
[INFO] Creating …/var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_meshing/tmp/mesh_dsm_r0.363947860277 [max] from 1 files
[DEBUG] running pdal pipeline -i /tmp/tmpxxdLSY.json > /dev/null 2>&1
[INFO] Completed …/var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_meshing/tmp/mesh_dsm_r0.363947860277 [max] in 0:01:34.773474
[INFO] Starting gap-filling with nearest interpolation…
[INFO] Completed gap-filling to create …/var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_meshing/tmp/mesh_dsm.tif in 0:00:09.465091
[INFO] Creating mesh from DSM: /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_meshing/tmp/mesh_dsm.tif
[DEBUG] running /code/SuperBuild/src/dem2mesh/dem2mesh -inputFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_meshing/tmp/mesh_dsm.tif -outputFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_meshing/odm_25dmesh.ply -maxVertexCount 100000
[INFO] Running ODM Meshing Cell - Finished
[INFO] Running MVS Texturing Cell
[DEBUG] Writing MVS Textured file in: /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_texturing/odm_textured_model.obj
[DEBUG] running /code/SuperBuild/install/bin/texrecon /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/opensfm/reconstruction.nvm /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_meshing/odm_mesh.ply /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_texturing/odm_textured_model -d gmi -o gauss_clamping -t none -n 65535
/code/SuperBuild/install/bin/texrecon (built on Jan 29 2019, 15:32:02)
Load and prepare mesh:
PLY Loader: comment VTK generated PLY File
Reading PLY: 85543 verts…
170138 faces…
done.
Warning: Zero-length normals detected: 2 face normals, 405 vertex normals
Generating texture views:
NVM: Loading file…
NVM: Number of views: 92
NVM: Number of features: 0
Loading 100%… done. (Took 51.066s)
Building adjacency graph:
Adding edges 100%… done. (Took 0.655s)
255139 total edges.
View selection:
Building BVH from 170138 faces…
done. (Took: 656 ms)
Calculating face qualities 100%… done. (Took 32.867s)
Postprocessing face infos 100%… done. (Took 1.725s)
Maximum quality of a face within an image: 1110.93
Clamping qualities to 186.21 within normalization.
Writing data cost file…
done.
Optimizing:
Time[s] Energy
0 149158
1 144707
2 142576
3 141431
3 140932
4 140571
4 140385
6 140207
6 140073
7 139997
7 139940
8 139889
8 139836
9 139784
10758 faces have not been seen
Took: 45.395s
Generating texture patches:
Running…
done. (Took 12.859s)
267 texture patches.
Running global seam leveling:
Create matrices for optimization…
done.
Lhs dimensionality: 86893 x 86893
Calculating adjustments:
Color channel 0: CG took 76 iterations. Residual is 8.92067e-05
Color channel 2: CG took 76 iterations. Residual is 8.95112e-05
Color channel 1: CG took 76 iterations. Residual is 8.89889e-05
Took 0.506 seconds
Adjusting texture patches 100%… done. (Took 4.102s)
Running local seam leveling:
Blending texture patches 100%… done. (Took 52.599s)
Generating texture atlases:
Sorting texture patches…
done.
Working on atlas 6 100%… done.
Finalizing texture atlases…
done. (Took: 10.809s)
Building objmodel:
Saving model…
done.
Whole texturing procedure took: 202.793s
[DEBUG] Writing MVS Textured file in: /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_texturing_25d/odm_textured_model.obj
[DEBUG] running /code/SuperBuild/install/bin/texrecon /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/opensfm/reconstruction.nvm /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_meshing/odm_25dmesh.ply /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_texturing_25d/odm_textured_model -d gmi -o gauss_clamping -t none --nadir_mode -n 65535
/code/SuperBuild/install/bin/texrecon (built on Jan 29 2019, 15:32:02)
Load and prepare mesh:
Reading PLY: 100215 verts…
200000 faces…
done.
Warning: Zero-length normals detected: 2 face normals, 0 vertex normals
Generating texture views:
NVM: Loading file…
NVM: Number of views: 92
NVM: Number of features: 0
Loading 100%… done. (Took 46.765s)
Building adjacency graph:
Adding edges 100%… done. (Took 0.788s)
299786 total edges.
View selection:
Building BVH from 200000 faces…
done. (Took: 629 ms)
Calculating face qualities 100%… done. (Took 31.245s)
Postprocessing face infos 100%… done. (Took 1.037s)
Maximum quality of a face within an image: 2916.1
Clamping qualities to 572.488 within normalization.
Writing data cost file…
done.
Optimizing:
Time[s] Energy
0 198287
5 197293
5 195635
6 194755
6 194325
7 194077
7 193933
12 193793
13 193731
13 193687
14 193638
14 193600
15 193577
81180 faces have not been seen
Took: 50.321s
Generating texture patches:
Running…
done. (Took 12.705s)
1541 texture patches.
Running global seam leveling:
Create matrices for optimization…
done.
Lhs dimensionality: 68695 x 68695
Calculating adjustments:
Color channel 2: CG took 79 iterations. Residual is 9.64558e-05
Color channel 0: CG took 79 iterations. Residual is 8.86415e-05
Color channel 1: CG took 79 iterations. Residual is 9.27089e-05
Took 0.402 seconds
Adjusting texture patches 100%… done. (Took 5.617s)
Running local seam leveling:
Blending texture patches 100%… done. (Took 58.521s)
Generating texture atlases:
Sorting texture patches…
done.
Working on atlas 6 100%… done.
Finalizing texture atlases…
done. (Took: 19.547s)
Building objmodel:
Saving model…
done.
Whole texturing procedure took: 219.344s
[INFO] Running ODM Texturing Cell - Finished
[INFO] Running ODM Georeferencing Cell
[INFO] Running georeferencing with OpenSfM transformation matrix
[DEBUG] running /code/build/bin/odm_georef -bundleFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/opensfm/bundle_r000.out -inputTransformFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/opensfm/geocoords_transformation.txt -inputCoordFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/coords.txt -inputFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_texturing/odm_textured_model.obj -outputFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_texturing/odm_textured_model_geo.obj -inputPointCloudFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/smvs/smvs_dense_point_cloud.ply -outputPointCloudFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferenced_model.laz -outputPointCloudSrs '+units=m +no_defs=True +datum=WGS84 +proj=utm +zone=16 ’ -logFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferencing_log.txt -outputTransformFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferencing_transform.txt -georefFileOutputPath /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferencing_model_geo.txt
[INFO] Calculating cropping area and generating bounds shapefile from point cloud
[DEBUG] running pdal translate -i “/var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferenced_model.laz” -o “/var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferenced_model.filtered.las” decimation outlier range --filters.decimation.step=90 --filters.outlier.method=radius --filters.outlier.radius=2 --filters.outlier.min_k=2 --filters.range.limits=‘Classification![7:7]’
[DEBUG] running pdal info --boundary --filters.hexbin.edge_length=1 --filters.hexbin.threshold=0 /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferenced_model.filtered.las > /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferenced_model.boundary.json
[DEBUG] running pdal info --summary /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferenced_model.laz > /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferenced_model.summary.json
[DEBUG] running ogr2ogr -overwrite -a_srs “+proj=utm +zone=16 +datum=WGS84 +units=m +no_defs” /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferenced_model.bounds.shp /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferenced_model.bounds.geojson
[INFO] Running georeferencing with OpenSfM transformation matrix
[DEBUG] running /code/build/bin/odm_georef -bundleFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/opensfm/bundle_r000.out -inputTransformFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/opensfm/geocoords_transformation.txt -inputCoordFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/coords.txt -inputFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_texturing_25d/odm_textured_model.obj -outputFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_texturing_25d/odm_textured_model_geo.obj -logFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_25dgeoreferencing/odm_georeferencing_log.txt -outputTransformFile /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_25dgeoreferencing/odm_georeferencing_transform.txt -georefFileOutputPath /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_25dgeoreferencing/odm_georeferencing_model_geo.txt
[INFO] Running ODM Georeferencing Cell - Finished
[INFO] Running ODM DEM Cell
[INFO] Classify: True
[INFO] Create DSM: True
[INFO] Create DTM: True
[INFO] DEM input file /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferenced_model.laz found: True
[INFO] Classifying /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferenced_model.laz using smrf
[DEBUG] running pdal translate -i /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferenced_model.laz -o /var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferenced_model.laz smrf --filters.smrf.cell=2 --filters.smrf.slope=10 --filters.smrf.window=10
[INFO] Created …/var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_georeferencing/odm_georeferenced_model.laz in 0:01:03.433838
[WARNING] Maximum resolution set to GSD - -300% (20.59 cm / pixel, requested resolution was 5.0 cm / pixel)
[INFO] Creating …/var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_dem/dsm_r0.10294083525858515 [idw] from 1 files
[DEBUG] running pdal pipeline -i /tmp/tmpzNSGkE.json > /dev/null 2>&1
[INFO] Creating …/var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_dem/dsm_r0.2058816705171703 [idw] from 1 files
[DEBUG] running pdal pipeline -i /tmp/tmpKRHq9V.json > /dev/null 2>&1
[INFO] Creating …/var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_dem/dsm_r0.4117633410343406 [idw] from 1 files
[DEBUG] running pdal pipeline -i /tmp/tmpugtazg.json > /dev/null 2>&1
[INFO] Completed …/var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_dem/dsm_r0.10294083525858515 [idw] in 0:16:50.104079
[INFO] Completed …/var/www/data/08ee2359-2e1d-446c-85c1-fb8d40f18a11/odm_dem/dsm_r0.4117633410343406 [idw] in 0:06:51.357588
Traceback (most recent call last):
File “/code/run.py”, line 47, in

plasm.execute(niter=1)
File “/code/scripts/odm_dem.py”, line 112, in process

max_workers=get_max_concurrency_for_dem(args.max_concurrency,tree.odm_georeferencing_model_laz)
File “/code/opendm/dem/commands.py”, line 38, in create_dems

fouts = list(e.map(create_dem_for_radius, radius))
File “/usr/local/lib/python2.7/dist-packages/loky/process_executor.py”, line 794, in _chain_from_iterable_of_lists

for element in iterable:
File “/usr/local/lib/python2.7/dist-packages/loky/_base.py”, line 589, in result_iterator

yield future.result()
File “/usr/local/lib/python2.7/dist-packages/loky/_base.py”, line 426, in result

return self.__get_result()
File “/usr/local/lib/python2.7/dist-packages/loky/_base.py”, line 381, in __get_result

raise self._exception
Exception
: Child returned 1

This was caused directly by
“”"
Traceback (most recent call last):
File “/usr/local/lib/python2.7/dist-packages/loky/process_executor.py”, line 418, in _process_worker
r = call_item()
File “/usr/local/lib/python2.7/dist-packages/loky/process_executor.py”, line 272, in call
return self.fn(*self.args, **self.kwargs)
File “/usr/local/lib/python2.7/dist-packages/loky/process_executor.py”, line 337, in _process_chunk
return [fn(*args) for args in chunk]
File “/code/opendm/dem/commands.py”, line 92, in create_dem
pdal.run_pipeline(json, verbose=verbose)
File “/code/opendm/dem/pdal.py”, line 232, in run_pipeline
out = system.run(’ ‘.join(cmd) + ’ > /dev/null 2>&1’)
File “/code/opendm/system.py”, line 34, in run
raise Exception(“Child returned {}”.format(retcode))
Exception: Child returned 1
“”"


#2

You are probably running out of memory. What happens if you lower --max-concurrency?