Issue : running gdal_proximity.py nadiral photos

[Francesco_D_Abramo]

Hello everybody I tried to perform a processing of 109 photos. The photos are nadiral photos of an olive grove in Italy. I state that I have already done more completed similar jobs processing went fine until it gave me this error:

#!/usr/bin/env python3

import sys

import osgeo.utils.gdal_proximity as a convenience to use as a script

from osgeo.utils.gdal_proximity import * # noqa
from osgeo.utils.gdal_proximity import main
from osgeo.gdal import deprecation_warn

deprecation_warn(‘gdal_proximity’, ‘utils’)
sys.exit(main(sys.argv))

[INFO] auto_boundary: True
[INFO] boundary: {}
[INFO] build_overviews: False
[INFO] camera_lens: auto
[INFO] cameras: {}
[INFO] cog: True
[INFO] copy_to: None
[INFO] crop: 3
[INFO] debug: False
[INFO] dem_decimation: 1
[INFO] dem_euclidean_map: True
[INFO] dem_gapfill_steps: 3
[INFO] dem_resolution: 2.0
[INFO] depthmap_resolution: 640
[INFO] dsm: True
[INFO] dtm: True
[INFO] end_with: odm_postprocess
[INFO] fast_orthophoto: False
[INFO] feature_quality: ultra
[INFO] feature_type: sift
[INFO] force_gps: False
[INFO] gcp: None
[INFO] geo: None
[INFO] gps_accuracy: 10
[INFO] ignore_gsd: True
[INFO] matcher_neighbors: 0
[INFO] matcher_type: flann
[INFO] max_concurrency: 8
[INFO] merge: all
[INFO] mesh_octree_depth: 11
[INFO] mesh_size: 200000
[INFO] min_num_features: 10000
[INFO] name: 79e4d524-743c-4179-b185-0b29e2ab64d5
[INFO] optimize_disk_space: False
[INFO] orthophoto_compression: DEFLATE
[INFO] orthophoto_cutline: False
[INFO] orthophoto_kmz: False
[INFO] orthophoto_no_tiled: False
[INFO] orthophoto_png: False
[INFO] orthophoto_resolution: 2.0
[INFO] pc_classify: True
[INFO] pc_copc: False
[INFO] pc_csv: False
[INFO] pc_ept: True
[INFO] pc_filter: 2.5
[INFO] pc_geometric: False
[INFO] pc_las: False
[INFO] pc_quality: ultra
[INFO] pc_rectify: False
[INFO] pc_sample: 0
[INFO] pc_tile: True
[INFO] primary_band: auto
[INFO] project_path: C:\WebODM\resources\app\apps\NodeODM\data
[INFO] radiometric_calibration: none
[INFO] rerun: None
[INFO] rerun_all: False
[INFO] rerun_from: None
[INFO] resize_to: 2048
[INFO] sfm_algorithm: incremental
[INFO] skip_3dmodel: False
[INFO] skip_band_alignment: False
[INFO] skip_orthophoto: False
[INFO] skip_report: False
[INFO] sm_cluster: None
[INFO] smrf_scalar: 1.25
[INFO] smrf_slope: 0.15
[INFO] smrf_threshold: 0.5
[INFO] smrf_window: 18.0
[INFO] split: 999999
[INFO] split_image_groups: None
[INFO] split_overlap: 150
[INFO] texturing_data_term: gmi
[INFO] texturing_keep_unseen_faces: False
[INFO] texturing_outlier_removal_type: gauss_clamping
[INFO] texturing_skip_global_seam_leveling: False
[INFO] texturing_skip_local_seam_leveling: False
[INFO] texturing_tone_mapping: none
[INFO] tiles: False
[INFO] time: False
[INFO] use_3dmesh: False
[INFO] use_exif: False
[INFO] use_fixed_camera_params: False
[INFO] use_hybrid_bundle_adjustment: False
[INFO] verbose: True
[INFO] ==============

[INFO] running gdal_translate -co NUM_THREADS=8 -co TILED=YES -co BIGTIFF=IF_SAFER -co COMPRESS=DEFLATE --config GDAL_CACHEMAX 39.25% “C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\merged.vrt” “C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\tiles.tif”
Input file size is 19075, 18245
0…10…20…30…40…50…60…70…80…90…100 - done.
[INFO] Starting smoothing…
[INFO] Smoothing iteration 1
[INFO] Completed smoothing to create C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.tif in 0:05:43.573984
[INFO] Completed dsm.tif in 0:20:22.142708
[INFO] Cropping C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.tif
[INFO] running gdalwarp -cutline “C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_georeferencing\odm_georeferenced_model.bounds.gpkg” -crop_to_cutline -co TILED=YES -co COMPRESS=DEFLATE -co BLOCKXSIZE=512 -co BLOCKYSIZE=512 -co BIGTIFF=IF_SAFER -co NUM_THREADS=8 “C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.original.tif” “C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.tif” --config GDAL_CACHEMAX 39.5%
Creating output file that is 18845P x 18003L.
Processing C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.original.tif [1/1] : 0Using internal nodata values (e.g. -9999) for image C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.original.tif.
Copying nodata values from source C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.original.tif to destination C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.tif.
…10…20…30…40…50…60…70…80…90…100 - done.
[INFO] Cropping C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.unfilled.tif
[INFO] running gdalwarp -cutline “C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_georeferencing\odm_georeferenced_model.bounds.gpkg” -crop_to_cutline -co TILED=YES -co COMPRESS=DEFLATE -co BLOCKXSIZE=512 -co BLOCKYSIZE=512 -co BIGTIFF=IF_SAFER -co NUM_THREADS=8 “C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.unfilled.original.tif” “C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.unfilled.tif” --config GDAL_CACHEMAX 39.2%
Creating output file that is 18845P x 18003L.
Processing C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.unfilled.original.tif [1/1] : 0Using internal nodata values (e.g. -9999) for image C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.unfilled.original.tif.
Copying nodata values from source C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.unfilled.original.tif to destination C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.unfilled.tif.
…10…20…30…40…50…60…70…80…90…100 - done.
[INFO] Computing euclidean distance: C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.euclideand.tif
[INFO] running gdal_proximity.py “C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.unfilled.tif” “C:\WebODM\resources\app\apps\NodeODM\data\79e4d524-743c-4179-b185-0b29e2ab64d5\odm_dem\dsm.euclideand.tif” -values -9999.0

[Saijin_Naib]

Did the Task processing fail?

Also, can you please remove --ignore-gsd from your Task options in the future? This flag is pretty dangerous and very often leads to random failures and crashes.

[Francesco_D_Abramo]

No processing didn’t fail but odm don’t work any more.
I tried to clear all memory reinstall webodm but i find the same issue.
Usually webodm work fine. I cant understand how it is possibile.
I have same problem with an other similar dataset.
It looks like that it isn’t a problem of dataset or setting.
I usually take photos at 50 m 75% front overlap and 65% side overlap with a gimbal pitch of 5°, usually web odm gives to me great results.

I have the folder of process in node data
I tried to restart it from calculating dem but web odm restart from a new pipeline and data

[Saijin_Naib]

What version of WebODM are you using?

When you start it, the blue splash screen will have the version and build on the bottom right.

[Francesco_D_Abramo]

Last update bulid 61
I want to try with an older version.

[Saijin_Naib]

We don’t archive prior versions since we’re a Rolling Release, unfortunately.

Reach out to [email protected] with your MYSXXXXXX-XXXX-XXXXX order confirmation number and I can schedule a remote support/troubleshoot appointment with you to see what’s going on, and see if we can gather data to fix this.

[Francesco_D_Abramo]

I will try with the version that i downloaded when i bought the windows version. If it dosen’t work i will ask support to uav4geo

[pierotofy]

Don’t use --split or --dem-euclidean-map as a workaround; it’s a bug that has been fixed with Programmatic gdal_proximity call · OpenDroneMap/[email protected] · GitHub but hasn’t been released with WebODM native (yet).

[Francesco_D_Abramo]

Thanks a lot
the bug is fixed
Grazie tante ho fatto come dici e ho risolto il problema
Complimenti per il vostro lavoro