Is there was way to export individual aligned images?

I’m helping a researcher working with bird photography taken from a drone. Unfortunately the orthomosaic process can cause a bird to appear in multiple locations after the images are merged and I’m looking for a way to use tie points to align the individual photos and then export those georectified images. Any thoughts would be greatly appreciated

See this thread for a bit of info on what the approach would need to be: Extracting orthorectified images