Dataset Cannot Process With GCPs but works without GCPs

Additionally, what would be the best camera/flight plan to model the height variation over stretches of terrain?

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That’s superbly odd. Can you attach your export somewhere like

Definitely something with GCPs.
Do you have a sUAS platform that can do terrain following? Keeping consistent overlap/sidelap during a survey where the terrain is highly variable ensures good/complete reconstruction.

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