Agrocam NDVI

https://drive.google.com/drive/folders/1K3RufWt04n_gdqmz0B89NM20krssE7pI?usp=sharing
I use agrocam ndvi multispectral camera. I tried more times to upload the pictures, but it did not work. I d like to ask some help. I paste the link of photos in a drive folder. Besides I paste my task’s output too.

2022-06-10 16:29:18,475 DEBUG: Ceres Solver Report: Iterations: 51, Initial cost: 6.255752e+01, Final cost: 5.865478e+01, Termination: NO_CONVERGENCE
2022-06-10 16:29:18,476 INFO: Removed outliers: 11
2022-06-10 16:29:18,477 INFO: -------------------------------------------------------
2022-06-10 16:29:18,480 INFO: Some images can not be added
2022-06-10 16:29:18,480 INFO: -------------------------------------------------------
2022-06-10 16:29:18,481 INFO: Shots and/or GCPs are well-conditionned. Using naive 3D-3D alignment.
2022-06-10 16:29:18,484 INFO: Shots and/or GCPs are well-conditionned. Using naive 3D-3D alignment.
2022-06-10 16:29:18,594 DEBUG: Ceres Solver Report: Iterations: 51, Initial cost: 3.218745e+01, Final cost: 2.540916e+01, Termination: NO_CONVERGENCE
2022-06-10 16:29:18,595 INFO: Removed outliers: 3
2022-06-10 16:29:18,596 INFO: {‘average_track_length’: 2.168, ‘points_count’: 125, ‘observations_count’: 271, ‘cameras_count’: 3, ‘average_track_length_notwo’: 3.0}
2022-06-10 16:29:18,596 INFO: Starting reconstruction with 2022_0525_143224_032.JPG and 2022_0525_143229_033.JPG
2022-06-10 16:29:18,609 INFO: Two-view reconstruction inliers: 101 / 102
2022-06-10 16:29:18,618 INFO: Triangulated: 101
2022-06-10 16:29:18,619 DEBUG: Ceres Solver Report: Iterations: 1, Initial cost: 8.609376e+09, Final cost: 8.609376e+09, Termination: CONVERGENCE
2022-06-10 16:29:18,632 DEBUG: Ceres Solver Report: Iterations: 1, Initial cost: 8.609376e+09, Final cost: 8.609376e+09, Termination: CONVERGENCE
2022-06-10 16:29:18,662 DEBUG: Ceres Solver Report: Iterations: 2, Initial cost: 3.146018e+01, Final cost: 3.023719e+01, Termination: CONVERGENCE
2022-06-10 16:29:18,663 INFO: Removed outliers: 2
2022-06-10 16:29:18,664 INFO: -------------------------------------------------------
2022-06-10 16:29:18,666 INFO: Some images can not be added
2022-06-10 16:29:18,666 INFO: -------------------------------------------------------
2022-06-10 16:29:18,715 DEBUG: Ceres Solver Report: Iterations: 2, Initial cost: 2.725748e+01, Final cost: 2.724177e+01, Termination: CONVERGENCE
2022-06-10 16:29:18,716 INFO: Removed outliers: 0
2022-06-10 16:29:18,716 INFO: {‘average_track_length’: 2.0, ‘points_count’: 100, ‘observations_count’: 200, ‘cameras_count’: 2, ‘average_track_length_notwo’: -1}
2022-06-10 16:29:18,716 INFO: Reconstruction 0: 27 images, 12658 points
2022-06-10 16:29:18,716 INFO: Reconstruction 1: 13 images, 22775 points
2022-06-10 16:29:18,717 INFO: Reconstruction 2: 7 images, 3849 points
2022-06-10 16:29:18,717 INFO: Reconstruction 3: 7 images, 2264 points
2022-06-10 16:29:18,717 INFO: Reconstruction 4: 6 images, 1450 points
2022-06-10 16:29:18,717 INFO: Reconstruction 5: 5 images, 1096 points
2022-06-10 16:29:18,717 INFO: Reconstruction 6: 3 images, 1059 points
2022-06-10 16:29:18,717 INFO: Reconstruction 7: 3 images, 277 points
2022-06-10 16:29:18,717 INFO: Reconstruction 8: 3 images, 125 points
2022-06-10 16:29:18,717 INFO: Reconstruction 9: 2 images, 425 points
2022-06-10 16:29:18,717 INFO: Reconstruction 10: 2 images, 283 points
2022-06-10 16:29:18,717 INFO: Reconstruction 11: 2 images, 151 points
2022-06-10 16:29:18,717 INFO: Reconstruction 12: 2 images, 139 points
2022-06-10 16:29:18,717 INFO: Reconstruction 13: 2 images, 87 points
2022-06-10 16:29:18,717 INFO: Reconstruction 14: 2 images, 68 points
2022-06-10 16:29:18,717 INFO: Reconstruction 15: 2 images, 100 points
2022-06-10 16:29:18,717 INFO: 16 partial reconstructions in total.
[INFO] Updating /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/opensfm/config.yaml
[INFO] undistorted_image_max_size: 4608
[INFO] running /code/SuperBuild/src/opensfm/bin/opensfm undistort “/www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/opensfm”
2022-06-10 16:29:23,817 DEBUG: Undistorting the reconstruction
2022-06-10 16:29:25,137 DEBUG: Undistorting image 2022_0525_143209_029.JPG
2022-06-10 16:29:25,480 DEBUG: Undistorting image 2022_0525_143154_026.JPG
2022-06-10 16:29:25,850 DEBUG: Undistorting image 2022_0525_143507_062.JPG
2022-06-10 16:29:26,255 DEBUG: Undistorting image 2022_0525_143400_048.JPG
2022-06-10 16:29:26,438 DEBUG: Undistorting image 2022_0525_143446_058.JPG
2022-06-10 16:29:26,910 DEBUG: Undistorting image 2022_0525_143516_064.JPG
2022-06-10 16:29:27,299 DEBUG: Undistorting image 2022_0525_143410_050.JPG
2022-06-10 16:29:27,730 DEBUG: Undistorting image 2022_0525_143512_063.JPG
2022-06-10 16:29:27,763 DEBUG: Undistorting image 2022_0525_143159_027.JPG
2022-06-10 16:29:28,321 DEBUG: Undistorting image 2022_0525_143138_023.JPG
2022-06-10 16:29:28,624 DEBUG: Undistorting image 2022_0525_143141_024.JPG
2022-06-10 16:29:29,126 DEBUG: Undistorting image 2022_0525_143125_020.JPG
2022-06-10 16:29:29,161 DEBUG: Undistorting image 2022_0525_143502_061.JPG
2022-06-10 16:29:29,731 DEBUG: Undistorting image 2022_0525_143703_082.JPG
2022-06-10 16:29:29,945 DEBUG: Undistorting image 2022_0525_143415_051.JPG
2022-06-10 16:29:30,521 DEBUG: Undistorting image 2022_0525_143149_025.JPG
2022-06-10 16:29:30,573 DEBUG: Undistorting image 2022_0525_143120_019.JPG
2022-06-10 16:29:31,040 DEBUG: Undistorting image 2022_0525_143452_059.JPG
2022-06-10 16:29:31,255 DEBUG: Undistorting image 2022_0525_143720_085.JPG
2022-06-10 16:29:31,915 DEBUG: Undistorting image 2022_0525_143708_083.JPG
2022-06-10 16:29:32,030 DEBUG: Undistorting image 2022_0525_143420_052.JPG
2022-06-10 16:29:32,393 DEBUG: Undistorting image 2022_0525_143204_028.JPG
2022-06-10 16:29:32,612 DEBUG: Undistorting image 2022_0525_143130_021.JPG
2022-06-10 16:29:33,242 DEBUG: Undistorting image 2022_0525_143658_081.JPG
2022-06-10 16:29:33,494 DEBUG: Undistorting image 2022_0525_143135_022.JPG
2022-06-10 16:29:33,763 DEBUG: Undistorting image 2022_0525_143457_060.JPG
2022-06-10 16:29:34,027 DEBUG: Undistorting image 2022_0525_143405_049.JPG
[INFO] running /code/SuperBuild/src/opensfm/bin/opensfm export_visualsfm --undistorted --points “/www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/opensfm”
2022-06-10 16:29:36,415 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,415 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,415 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,415 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,415 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,416 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,416 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,416 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,416 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,416 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,417 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,417 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,417 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,417 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,417 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,417 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,418 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,418 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,418 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,418 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,418 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,419 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,419 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,419 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,419 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,419 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,420 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,420 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,420 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,420 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,420 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,420 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,421 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,421 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,421 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,421 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,421 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,421 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,422 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,422 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,422 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,422 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,423 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,423 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,423 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,423 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,423 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,423 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,424 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,424 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,424 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,424 DEBUG: STREAM ‘IDAT’ 41 8192
2022-06-10 16:29:36,425 DEBUG: STREAM ‘IHDR’ 16 13
2022-06-10 16:29:36,425 DEBUG: STREAM ‘IDAT’ 41 8192
[INFO] running /code/SuperBuild/src/opensfm/bin/opensfm export_geocoords --transformation --proj ‘+proj=utm +zone=33 +datum=WGS84 +units=m +no_defs +type=crs’ “/www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/opensfm”
[INFO] Finished opensfm stage
[INFO] Running mve stage
[INFO] running /code/SuperBuild/src/elibs/mve/apps/makescene/makescene “/www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/opensfm/reconstruction.nvm” “/www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/mve”
MVE Makescene (built on Nov 13 2019, 10:34:09)
Info: Detected VisualSFM bundle format.
NVM: Loading file…
NVM: Number of views: 27
NVM: Number of features: 12658
Creating output directories…
Writing MVE views…
Writing MVE view: view_0000.mve…
Writing MVE view: view_0003.mve…
Writing MVE view: view_0001.mve…
Writing MVE view: view_0002.mve…
Writing MVE view: view_0004.mve…
Writing MVE view: view_0005.mve…
Writing MVE view: view_0006.mve…
Writing MVE view: view_0007.mve…
Writing MVE view: view_0008.mve…
Writing MVE view: view_0009.mve…
Writing MVE view: view_0010.mve…
Writing MVE view: view_0011.mve…
Writing MVE view: view_0012.mve…
Writing MVE view: view_0013.mve…
Writing MVE view: view_0014.mve…
Writing MVE view: view_0015.mve…
Writing MVE view: view_0016.mve…
Writing MVE view: view_0017.mve…
Writing MVE view: view_0018.mve…
Writing MVE view: view_0019.mve…
Writing MVE view: view_0021.mve…
Writing MVE view: view_0020.mve…
Writing MVE view: view_0022.mve…
Writing MVE view: view_0023.mve…
Writing MVE view: view_0024.mve…
Writing MVE view: view_0025.mve…
Writing MVE view: view_0026.mve…
Writing bundle file…
Writing bundle (27 cameras, 12658 features): /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/mve/synth_0.out…

Done importing NVM file!
[INFO] Running dense reconstruction. This might take a while. Please be patient, the process is not dead or hung.
[INFO] Process is running
[INFO] running /code/SuperBuild/src/elibs/mve/apps/dmrecon/dmrecon -s3 --progress=silent --local-neighbors=2 “/www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/mve”
MVE Depth Map Reconstruction (built on Nov 13 2019, 10:34:06)
Initializing scene with 27 views…
Initialized 27 views (max ID is 26), took 1ms.
Reading Photosynther file (27 cameras, 12658 features)…
Reconstructing all views…
*** Error in `/code/SuperBuild/src/elibs/mve/apps/dmrecon/dmrecon’: corrupted double-linked list: 0x0000000001be9d50 ***
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7fedc84687e5]
/lib/x86_64-linux-gnu/libc.so.6(+0x82970)[0x7fedc8473970]
/lib/x86_64-linux-gnu/libc.so.6(__libc_malloc+0x54)[0x7fedc8475184]
/usr/lib/x86_64-linux-gnu/libstdc++.so.6(_Znwm+0x18)[0x7fedc91a6e78]
/usr/lib/x86_64-linux-gnu/libstdc++.so.6(_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE9_M_mutateEmmPKcm+0x69)[0x7fedc9238499]
/usr/lib/x86_64-linux-gnu/libstdc++.so.6(_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE14_M_replace_auxEmmmc+0xc8)[0x7fedc9238c98]
/code/SuperBuild/src/elibs/mve/apps/dmrecon/dmrecon[0x475e4a]
/code/SuperBuild/src/elibs/mve/apps/dmrecon/dmrecon[0x435449]
/code/SuperBuild/src/elibs/mve/apps/dmrecon/dmrecon[0x4359e8]
/code/SuperBuild/src/elibs/mve/apps/dmrecon/dmrecon[0x40c1c3]
/usr/lib/x86_64-linux-gnu/libgomp.so.1(GOMP_parallel+0x3f)[0x7fedc8bf9cbf]
/code/SuperBuild/src/elibs/mve/apps/dmrecon/dmrecon[0x4083ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7fedc8411830]
/code/SuperBuild/src/elibs/mve/apps/dmrecon/dmrecon[0x4097c9]
======= Memory map: ========
00400000-0048d000 r-xp 00000000 08:01 92150000 /code/SuperBuild/src/elibs/mve/apps/dmrecon/dmrecon
0068c000-0068e000 r–p 0008c000 08:01 92150000 /code/SuperBuild/src/elibs/mve/apps/dmrecon/dmrecon
0068e000-0068f000 rw-p 0008e000 08:01 92150000 /code/SuperBuild/src/elibs/mve/apps/dmrecon/dmrecon
0068f000-00691000 rw-p 00000000 00:00 0
01bd6000-0acda000 rw-p 00000000 00:00 0 [heap]
7fed8c000000-7fed8c021000 rw-p 00000000 00:00 0
7fed8c021000-7fed90000000 —p 00000000 00:00 0
7fed93856000-7fedb0000000 rw-p 00000000 00:00 0
7fedb0000000-7fedb334e000 rw-p 00000000 00:00 0
7fedb334e000-7fedb4000000 —p 00000000 00:00 0
7fedb526f000-7fedb8000000 rw-p 00000000 00:00 0
7fedb8000000-7fedb8e42000 rw-p 00000000 00:00 0
7fedb8e42000-7fedbc000000 —p 00000000 00:00 0
7fedbd26f000-7fedc0000000 rw-p 00000000 00:00 0
7fedc0000000-7fedc0e42000 rw-p 00000000 00:00 0
7fedc0e42000-7fedc4000000 —p 00000000 00:00 0
7fedc63a0000-7fedc63a1000 —p 00000000 00:00 0
7fedc63a1000-7fedc6ba1000 rw-p 00000000 00:00 0
7fedc6ba1000-7fedc6ba2000 —p 00000000 00:00 0
7fedc6ba2000-7fedc73a2000 rw-p 00000000 00:00 0
7fedc73a2000-7fedc73a3000 —p 00000000 00:00 0
7fedc73a3000-7fedc7ba3000 rw-p 00000000 00:00 0
7fedc7ba3000-7fedc7ba6000 r-xp 00000000 08:01 72355203 /lib/x86_64-linux-gnu/libdl-2.23.so
7fedc7ba6000-7fedc7da5000 —p 00003000 08:01 72355203 /lib/x86_64-linux-gnu/libdl-2.23.so
7fedc7da5000-7fedc7da6000 r–p 00002000 08:01 72355203 /lib/x86_64-linux-gnu/libdl-2.23.so
7fedc7da6000-7fedc7da7000 rw-p 00003000 08:01 72355203 /lib/x86_64-linux-gnu/libdl-2.23.so
7fedc7da7000-7fedc7db2000 r-xp 00000000 08:01 120463703 /usr/lib/x86_64-linux-gnu/libjbig.so.0
7fedc7db2000-7fedc7fb1000 —p 0000b000 08:01 120463703 /usr/lib/x86_64-linux-gnu/libjbig.so.0
7fedc7fb1000-7fedc7fb2000 r–p 0000a000 08:01 120463703 /usr/lib/x86_64-linux-gnu/libjbig.so.0
7fedc7fb2000-7fedc7fb5000 rw-p 0000b000 08:01 120463703 /usr/lib/x86_64-linux-gnu/libjbig.so.0
7fedc7fb5000-7fedc7fd6000 r-xp 00000000 08:01 72356304 /lib/x86_64-linux-gnu/liblzma.so.5.0.0
7fedc7fd6000-7fedc81d5000 —p 00021000 08:01 72356304 /lib/x86_64-linux-gnu/liblzma.so.5.0.0
7fedc81d5000-7fedc81d6000 r–p 00020000 08:01 72356304 /lib/x86_64-linux-gnu/liblzma.so.5.0.0
7fedc81d6000-7fedc81d7000 rw-p 00021000 08:01 72356304 /lib/x86_64-linux-gnu/liblzma.so.5.0.0
7fedc81d7000-7fedc81f0000 r-xp 00000000 08:01 72351837 /lib/x86_64-linux-gnu/libz.so.1.2.8
7fedc81f0000-7fedc83ef000 —p 00019000 08:01 72351837 /lib/x86_64-linux-gnu/libz.so.1.2.8
7fedc83ef000-7fedc83f0000 r–p 00018000 08:01 72351837 /lib/x86_64-linux-gnu/libz.so.1.2.8
7fedc83f0000-7fedc83f1000 rw-p 00019000 08:01 72351837 /lib/x86_64-linux-gnu/libz.so.1.2.8
7fedc83f1000-7fedc85b1000 r-xp 00000000 08:01 72355201 /lib/x86_64-linux-gnu/libc-2.23.so
7fedc85b1000-7fedc87b1000 —p 001c0000 08:01 72355201 /lib/x86_64-linux-gnu/libc-2.23.so
7fedc87b1000-7fedc87b5000 r–p 001c0000 08:01 72355201 /lib/x86_64-linux-gnu/libc-2.23.so
7fedc87b5000-7fedc87b7000 rw-p 001c4000 08:01 72355201 /lib/x86_64-linux-gnu/libc-2.23.so
7fedc87b7000-7fedc87bb000 rw-p 00000000 00:00 0
7fedc87bb000-7fedc87d3000 r-xp 00000000 08:01 72355200 /lib/x86_64-linux-gnu/libpthread-2.23.so
7fedc87d3000-7fedc89d2000 —p 00018000 08:01 72355200 /lib/x86_64-linux-gnu/libpthread-2.23.so
7fedc89d2000-7fedc89d3000 r–p 00017000 08:01 72355200 /lib/x86_64-linux-gnu/libpthread-2.23.so
7fedc89d3000-7fedc89d4000 rw-p 00018000 08:01 72355200 /lib/x86_64-linux-gnu/libpthread-2.23.so
7fedc89d4000-7fedc89d8000 rw-p 00000000 00:00 0
7fedc89d8000-7fedc89ee000 r-xp 00000000 08:01 72356275 /lib/x86_64-linux-gnu/libgcc_s.so.1
7fedc89ee000-7fedc8bed000 —p 00016000 08:01 72356275 /lib/x86_64-linux-gnu/libgcc_s.so.1
7fedc8bed000-7fedc8bee000 rw-p 00015000 08:01 72356275 /lib/x86_64-linux-gnu/libgcc_s.so.1
7fedc8bee000-7fedc8c0f000 r-xp 00000000 08:01 120457217 /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0
7fedc8c0f000-7fedc8e0e000 —p 00021000 08:01 120457217 /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0
7fedc8e0e000-7fedc8e0f000 r–p 00020000 08:01 120457217 /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0
7fedc8e0f000-7fedc8e10000 rw-p 00021000 08:01 120457217 /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0
7fedc8e10000-7fedc8f18000 r-xp 00000000 08:01 72355196 /lib/x86_64-linux-gnu/libm-2.23.so
7fedc8f18000-7fedc9117000 —p 00108000 08:01 72355196 /lib/x86_64-linux-gnu/libm-2.23.so
7fedc9117000-7fedc9118000 r–p 00107000 08:01 72355196 /lib/x86_64-linux-gnu/libm-2.23.so
7fedc9118000-7fedc9119000 rw-p 00108000 08:01 72355196 /lib/x86_64-linux-gnu/libm-2.23.so
7fedc9119000-7fedc928b000 r-xp 00000000 08:01 120457231 /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.21
7fedc928b000-7fedc948b000 —p 00172000 08:01 120457231 /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.21
7fedc948b000-7fedc9495000 r–p 00172000 08:01 120457231 /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.21
7fedc9495000-7fedc9497000 rw-p 0017c000 08:01 120457231 /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.21
7fedc9497000-7fedc949b000 rw-p 00000000 00:00 0
7fedc949b000-7fedc94f2000 r-xp 00000000 08:01 120456412 /usr/lib/x86_64-linux-gnu/libjpeg.so.8.0.2
7fedc94f2000-7fedc96f2000 —p 00057000 08:01 120456412 /usr/lib/x86_64-linux-gnu/libjpeg.so.8.0.2
7fedc96f2000-7fedc96f3000 r–p 00057000 08:01 120456412 /usr/lib
/x86_64-linux-gnu/libjpeg.so.8.0.2
7fedc96f3000-7fedc96f4000 rw-p 00058000 08:01 120456412 /usr/lib/x86_64-linux-gnu/libjpeg.so.8.0.2
7fedc96f4000-7fedc9765000 r-xp 00000000 08:01 120457043 /usr/lib/x86_64-linux-gnu/libtiff.so.5.2.4
7fedc9765000-7fedc9965000 —p 00071000 08:01 120457043 /usr/lib/x86_64-linux-gnu/libtiff.so.5.2.4
7fedc9965000-7fedc9966000 r–p 00071000 08:01 120457043 /usr/lib/x86_64-linux-gnu/libtiff.so.5.2.4
7fedc9966000-7fedc9969000 rw-p 00072000 08:01 120457043 /usr/lib/x86_64-linux-gnu/libtiff.so.5.2.4
7fedc9969000-7fedc998d000 r-xp 00000000 08:01 72351996 /lib/x86_64-linux-gnu/libpng12.so.0.54.0
7fedc998d000-7fedc9b8c000 —p 00024000 08:01 72351996 /lib/x86_64-linux-gnu/libpng12.so.0.54.0
7fedc9b8c000-7fedc9b8d000 r–p 00023000 08:01 72351996 /lib/x86_64-linux-gnu/libpng12.so.0.54.0
7fedc9b8d000-7fedc9b8e000 rw-p 00024000 08:01 72351996 /lib/x86_64-linux-gnu/libpng12.so.0.54.0
7fedc9b8e000-7fedc9bb4000 r-xp 00000000 08:01 72355199 /lib/x86_64-linux-gnu/ld-2.23.so
7fedc9cd9000-7fedc9d78000 rw-p 00000000 00:00 0
7fedc9db2000-7fedc9db3000 rw-p 00000000 00:00 0
7fedc9db3000-7fedc9db4000 r–p 00025000 08:01 72355199 /lib/x86_64-linux-gnu/ld-2.23.so
7fedc9db4000-7fedc9db5000 rw-p 00026000 08:01 72355199 /lib/x86_64-linux-gnu/ld-2.23.so
7fedc9db5000-7fedc9db6000 rw-p 00000000 00:00 0
7fffe95c8000-7fffe95e9000 rw-p 00000000 00:00 0 [stack]
7fffe95fb000-7fffe95fe000 r–p 00000000 00:00 0 [vvar]
7fffe95fe000-7fffe9600000 r-xp 00000000 00:00 0 [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
Aborted (core dumped)
[WARNING] Caught error code, retrying attempt #2
[INFO] running /code/SuperBuild/src/elibs/mve/apps/dmrecon/dmrecon -s3 --progress=silent --local-neighbors=2 “/www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/mve”
MVE Depth Map Reconstruction (built on Nov 13 2019, 10:34:06)
Initializing scene with 27 views…
View: Unrecognized extension undist-L3.png.new, skipping.
Initialized 27 views (max ID is 26), took 0ms.
Reading Photosynther file (27 cameras, 12658 features)…
Reconstructing all views…
Reconstruction took 100741ms.
Saving views back to disc…
Saving views to MVE files… done.
[INFO] running /code/SuperBuild/src/elibs/mve/apps/scene2pset/scene2pset -F3 “/www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/mve” “/www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/mve/mve_dense_point_cloud.ply”
MVE Scene to Pointset (built on Nov 13 2019, 10:34:16)
Using depthmap “depth-L3” and color image “undist-L3”
Initializing scene with 27 views…
View: Unrecognized extension undist-L3.png.new, skipping.
Initialized 27 views (max ID is 26), took 1ms.
Processing view “0000”…
Processing view “0001” (with colors)…
Processing view “0002” (with colors)…
Processing view “0003” (with colors)…
Processing view “0005” (with colors)…
Processing view “0006” (with colors)…
Processing view “0004” (with colors)…
Processing view “0007” (with colors)…
Processing view “0008” (with colors)…
Processing view “0010” (with colors)…
Processing view “0009” (with colors)…
Processing view “0011” (with colors)…
Processing view “0012” (with colors)…
Processing view “0013” (with colors)…
Processing view “0014” (with colors)…
Processing view “0015” (with colors)…
Processing view “0016” (with colors)…
Processing view “0017” (with colors)…
Processing view “0019” (with colors)…
Processing view “0018” (with colors)…
Processing view “0020” (with colors)…
Processing view “0021” (with colors)…
Processing view “0022” (with colors)…
Processing view “0023” (with colors)…
Processing view “0024” (with colors)…
Processing view “0026” (with colors)…
Processing view “0025” (with colors)…
Writing final point set (27623 points)…
Writing PLY file (27623 verts, with colors, with normals, with confidences, with values, 0 faces)…
done.
[INFO] running /code/SuperBuild/src/elibs/mve/apps/meshclean/meshclean -t0.6 --no-clean --component-size=0 “/www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/mve/mve_dense_point_cloud.ply” “/www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/mve/mve_dense_point_cloud.filtered.ply”
MVE FSSR Mesh Cleaning (built on Nov 13 2019, 10:34:36)
Loading mesh: /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/mve/mve_dense_point_cloud.ply
PLY Loader: comment Export generated by libmve
Reading PLY: 27623 verts…
done.
Removing low-confidence geometry (threshold 0.6)…
Deleted 24131 low-confidence vertices.
Writing mesh: /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/mve/mve_dense_point_cloud.filtered.ply
Writing PLY file (3492 verts, with colors, with normals, with confidences, with values, 0 faces)…
done.
[INFO] Finished mve stage
[INFO] Running odm_filterpoints stage
[INFO] Filtering point cloud (statistical, meanK 16, standard deviation 2.5)
[INFO] running /code/build/bin/odm_filterpoints -inputFile /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/mve/mve_dense_point_cloud.ply -outputFile /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_filterpoints/point_cloud.ply -sd 2.5 -meank 16 -sample 0 -verbose
Running with parameters:
–inputFile /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/mve/mve_dense_point_cloud.ply
–outputFile /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_filterpoints/point_cloud.ply
–sd 2.500000
–meank 16.000000
–sample 0.000000
–verbose
Filtering point cloud…
Done!
[INFO] Finished odm_filterpoints stage
[INFO] Running odm_meshing stage
[INFO] Writing ODM Mesh file in: /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/odm_mesh.ply
[INFO] running /code/SuperBuild/src/PoissonRecon/Bin/Linux/PoissonRecon --in /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_filterpoints/point_cloud.ply --out /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/odm_mesh.dirty.ply --depth 9 --pointWeight 4 --samplesPerNode 1.0 --threads 3 --linearFit --verbose

** Running Screened Poisson Reconstruction (Version 10.02) **

–in /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_filterpoints/point_cloud.ply
–depth 9
–out /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/odm_mesh.dirty.ply
–verbose
–samplesPerNode 1.000000
–pointWeight 4.000000
–threads 3
–linearFit
Input Points / Samples: 3408 / 1660

Read input into tree: 0.0 (s), 4.4 (MB) / 4.4 (MB) / 0.0 (MB)

Got kernel density: 0.0 (s), 4.8 (MB) / 4.8 (MB) / 0.5 (MB)

Got normal field: 0.0 (s), 5.8 (MB) / 5.8 (MB) / 0.0 (MB)

Point weight / Estimated Area: 5.72686e-06 / 0.0195171

Finalized tree: 0.0 (s), 10.8 (MB) / 10.8 (MB) / 0.0 (MB)

Set FEM constraints: 0.1 (s), 12.5 (MB) / 12.5 (MB) / 0.0 (MB)

#Set point constraints: 0.0 (s), 12.5 (MB) / 12.5 (MB) / 0.5 (MB)
Leaf Nodes / Active Nodes / Ghost Nodes: 110433 / 124864 / 1345
Memory Usage: 12.496 MB
Cycle[0] Depth[0/9]: Updated constraints / Got system / Solved in: 0.000 / 0.001 / 0.010 (12.801 MB) Nodes: 8
Cycle[0] Depth[1/9]: Updated constraints / Got system / Solved in: 0.001 / 0.000 / 0.000 (12.801 MB) Nodes: 27
Cycle[0] Depth[2/9]: Updated constraints / Got system / Solved in: 0.001 / 0.000 / 0.001 (12.801 MB) Nodes: 125
Cycle[0] Depth[3/9]: Updated constraints / Got system / Solved in: 0.001 / 0.002 / 0.001 (12.801 MB) Nodes: 729
Cycle[0] Depth[4/9]: Updated constraints / Got system / Solved in: 0.001 / 0.007 / 0.002 (13.645 MB) Nodes: 4913
Cycle[0] Depth[5/9]: Updated constraints / Got system / Solved in: 0.002 / 0.020 / 0.007 (15.188 MB) Nodes: 35937
Cycle[0] Depth[6/9]: Updated constraints / Got system / Solved in: 0.001 / 0.003 / 0.006 (15.188 MB) Nodes: 8936
Cycle[0] Depth[7/9]: Updated constraints / Got system / Solved in: 0.002 / 0.005 / 0.012 (15.188 MB) Nodes: 13784
Cycle[0] Depth[8/9]: Updated constraints / Got system / Solved in: 0.002 / 0.007 / 0.023 (15.188 MB) Nodes: 18592
Cycle[0] Depth[9/9]: Updated constraints / Got system / Solved in: 0.002 / 0.009 / 0.044 (15.188 MB) Nodes: 15984

Linear system solved: 0.2 (s), 15.2 (MB) / 15.2 (MB) / 0.0 (MB)

Got average: 0.0 (s), 15.2 (MB) / 15.2 (MB) / 0.3 (MB)
Iso-Value: 4.989861e-01 = 1700.54 / 3408
Vertices / Polygons: 12795 / 25400
Corners / Vertices / Edges / Surface / Set Table / Copy Finer: 0.0 / 0.0 / 0.0 / 0.0 / 0.0 / 0.0 (s)

Got triangles: 0.1 (s), 36.7 (MB) / 36.7 (MB) / 0.0 (MB)

Total Solve: 0.5 (s), 36.7 (MB)

[INFO] running /code/build/bin/odm_cleanmesh -inputFile /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/odm_mesh.dirty.ply -outputFile /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/odm_mesh.ply -removeIslands -decimateMesh 100000 -verbose
Running with parameters:
–inputFile /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/odm_mesh.dirty.ply
–outputFile /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/odm_mesh.ply
–decimateMesh 100000
–removeIslands
–verbose
Removing islands
Decimating mesh
Current vertex count: 12795
Wanted vertex count: 100000
Skipping decimation
Saving cleaned mesh to file…
OK
[INFO] Writing ODM 2.5D Mesh file in: /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/odm_25dmesh.ply
[WARNING] Maximum resolution set to GSD - 10.0% (13558.03 cm / pixel, requested resolution was 5.0 cm / pixel)
[INFO] ODM 2.5D DSM resolution: 2042446.687463816
[INFO] Created temporary directory: /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/tmp
[INFO] Creating DSM for 2.5D mesh
[INFO] running pdal info /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_filterpoints/point_cloud.ply > /tmp/tmp99KtGT.json
[INFO] Point cloud bounds are [minx: 1918010.625, maxx: 1918146.25] [miny: 321503.4375, maxy: 321722.0312]
[WARNING] Really low resolution DEM requested (1, 1) will set floor at 64 pixels. Resolution changed to 31913.229491622125. The scale of this reconstruction might be off.
[INFO] DEM resolution is (104, 64), max tile size is 4096, will split DEM generation into 1 tiles
[INFO] Generating /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/tmp/mesh_dsm_r45132.1219662_x0_y0.tif (max, radius: 45132.1219662, resolution: 31913.229491622125)
[INFO] Pipeline file: /tmp/tmpvGaC3e.json
[INFO] running pdal pipeline -i /tmp/tmpvGaC3e.json
[INFO] running gdalbuildvrt “/www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/tmp/tiles.vrt” “/www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/tmp/mesh_dsm_r45132.1219662_x0_y0.tif”
0…10…20…30…40…50…60…70…80…90…100 - done.
[INFO] running gdal_translate -co NUM_THREADS=4 --config GDAL_CACHEMAX 45.15% /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/tmp/tiles.vrt /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/tmp/tiles.tmp.tif
Input file size is 1, 1
0
…10…20…30…40…50…60…70…80…90…100 - done.
[INFO] running gdal_translate -co NUM_THREADS=4 --config GDAL_CACHEMAX 45.15% -outsize 10% 0 /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/tmp/tiles.tmp.tif /www/data/ef71acfb-49d9-450e-a584-d15c9e5ac1f9/odm_meshing/tmp/tiles.small.tif
ERROR 5: Attempt to create 0x0 dataset is illegal.
Input file size is 1, 1
Traceback (most recent call last):
File “/code/run.py”, line 57, in
app.execute()
File “/code/stages/odm_app.py”, line 92, in execute
self.first_stage.run()
File “/code/opendm/types.py”, line 370, in run
self.next_stage.run(outputs)
File “/code/opendm/types.py”, line 370, in run
self.next_stage.run(outputs)
File “/code/opendm/types.py”, line 370, in run
self.next_stage.run(outputs)
File “/code/opendm/types.py”, line 370, in run
self.next_stage.run(outputs)
File “/code/opendm/types.py”, line 370, in run
self.next_stage.run(outputs)
File “/code/opendm/types.py”, line 370, in run
self.next_stage.run(outputs)
File “/code/opendm/types.py”, line 351, in run
self.process(self.args, outputs)
File “/code/stages/odm_meshing.py”, line 72, in process
smooth_dsm=not args.fast_orthophoto)
File “/code/opendm/mesh.py”, line 35, in create_25dmesh
apply_smoothing=smooth_dsm
File “/code/opendm/dem/commands.py”, line 240, in create_dem
‘{geotiff_tmp} {geotiff_small}’.format(**kwargs))
File “/code/opendm/system.py”, line 76, in run
raise Exception(“Child returned {}”.format(retcode))
Exception
: Child returned 1

1 Like

Welcome!

Sorry for the trouble.

Can you provide us with more information about the Survey Design? You’ve got 16 total reconstruction groups, and ideally you want just 1, and that usually indicates too low sidelap/overlap between images, or an incredibly difficult scene.

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